Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC138969.3-201ENST00000546612 1459 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC138932.2-201ENST00000548268 1459 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC126755.4-201ENST00000549796 1459 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 SLC7A15P-201ENST00000424028 1363 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC025048.3-201ENST00000590609 569 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC008494.3-201ENST00000606615 944 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC004790.1-201ENST00000612686 536 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC005702.4-201ENST00000618393 416 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC007431.3-201ENST00000623221 587 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC006449.6-201ENST00000612330 2296 ntBASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLIP3Q96DZ5 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC006449.5-201ENST00000610658 2098 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC098614.1-201ENST00000368528 745 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AP006294.1-201ENST00000415407 339 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 COX5BP8-201ENST00000416911 349 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC023310.3-201ENST00000557027 670 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC100756.1-201ENST00000562736 682 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC138749.3-201ENST00000567691 622 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC116165.1-201ENST00000611806 668 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 AC105917.1-201ENST00000506637 2539 ntBASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms