Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AL118508.1-201ENST00000613502 2345 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 KRT8P35-201ENST00000483942 1338 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC092127.1-201ENST00000567093 3455 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 BRWD1P1-201ENST00000401091 371 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 YBX1P6-201ENST00000442962 1002 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC078819.1-201ENST00000547454 765 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC012085.1-201ENST00000548270 765 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC079316.1-201ENST00000548397 411 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 AC127383.1-201ENST00000444697 1800 ntBASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNFT1Q5M7Z0 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC006001.1-201ENST00000325130 474 ntBASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 KLF2P2-201ENST00000416807 1039 ntBASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 RPL13AP20-201ENST00000459725 609 ntBASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC108725.1-201ENST00000495472 409 ntBASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC010328.2-201ENST00000597698 1111 ntBASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.96□□□□□ -0.17
RNFT1Q5M7Z0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms