Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC006449.5-201ENST00000610658 2098 ntBASIC20■□□□□ 0.79
COL18A1P39060 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL18A1P39060 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC20■□□□□ 0.79
COL18A1P39060 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC20■□□□□ 0.79
COL18A1P39060 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC20■□□□□ 0.79
COL18A1P39060 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL18A1P39060 AC090857.1-201ENST00000527400 390 ntBASIC20■□□□□ 0.79
COL18A1P39060 NEU3-205ENST00000531619 582 ntTSL 5 BASIC20■□□□□ 0.79
COL18A1P39060 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20■□□□□ 0.79
COL18A1P39060 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20■□□□□ 0.79
COL18A1P39060 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL18A1P39060 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL18A1P39060 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC19.99■□□□□ 0.79
COL18A1P39060 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
COL18A1P39060 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC19.99■□□□□ 0.79
COL18A1P39060 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC19.99■□□□□ 0.79
COL18A1P39060 AL645933.1-201ENST00000440087 609 ntBASIC19.99■□□□□ 0.79
COL18A1P39060 PUDPP3-201ENST00000445368 636 ntBASIC19.99■□□□□ 0.79
COL18A1P39060 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
COL18A1P39060 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.99■□□□□ 0.79
COL18A1P39060 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC19.99■□□□□ 0.79
COL18A1P39060 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC19.99■□□□□ 0.79
COL18A1P39060 AC008805.1-201ENST00000590892 364 ntBASIC19.99■□□□□ 0.79
COL18A1P39060 COX6A1P2-201ENST00000620597 330 ntBASIC19.99■□□□□ 0.79
COL18A1P39060 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
COL18A1P39060 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.99■□□□□ 0.79
COL18A1P39060 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 AC003102.2-201ENST00000589195 1469 ntBASIC19.99■□□□□ 0.79
COL18A1P39060 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL18A1P39060 CYP2T1P-202ENST00000641596 2535 ntBASIC19.99■□□□□ 0.79
COL18A1P39060 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC19.98■□□□□ 0.79
COL18A1P39060 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
COL18A1P39060 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL18A1P39060 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 WT1-AS_6.1-201ENST00000614919 121 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 AC007718.1-201ENST00000621078 280 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC19.98■□□□□ 0.79
COL18A1P39060 AL805961.1-201ENST00000642026 753 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.98■□□□□ 0.79
COL18A1P39060 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.98■□□□□ 0.79
COL18A1P39060 CYP4F23P-201ENST00000593402 1579 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 AL137783.1-201ENST00000623494 1896 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.98■□□□□ 0.79
COL18A1P39060 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
COL18A1P39060 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.98■□□□□ 0.79
COL18A1P39060 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 AC078991.1-201ENST00000437297 610 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC19.98■□□□□ 0.79
COL18A1P39060 AC135983.4-201ENST00000564116 1262 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 AC026803.1-201ENST00000569130 274 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 AC103691.2-201ENST00000618824 433 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL18A1P39060 PCDHA14-201ENST00000506751 2298 ntBASIC19.98■□□□□ 0.79
COL18A1P39060 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL18A1P39060 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC19.97■□□□□ 0.79
COL18A1P39060 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.97■□□□□ 0.79
COL18A1P39060 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL18A1P39060 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC19.97■□□□□ 0.79
COL18A1P39060 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.97■□□□□ 0.79
COL18A1P39060 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC19.97■□□□□ 0.79
COL18A1P39060 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.97■□□□□ 0.79
COL18A1P39060 NAT9-211ENST00000580632 799 ntTSL 3 BASIC19.97■□□□□ 0.79
COL18A1P39060 AC087045.2-201ENST00000606279 1003 ntBASIC19.97■□□□□ 0.79
COL18A1P39060 NAP1L6-202ENST00000641404 1222 ntBASIC19.97■□□□□ 0.79
COL18A1P39060 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL18A1P39060 AC105250.1-201ENST00000509378 2057 ntBASIC19.97■□□□□ 0.79
COL18A1P39060 PES1-204ENST00000402284 2144 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms