Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SHMT2P34897 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 SPDYE19P-201ENST00000338590 713 ntBASIC15.3■□□□□ 0.04
SHMT2P34897 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.3■□□□□ 0.04
SHMT2P34897 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.3■□□□□ 0.04
SHMT2P34897 PIN1P1-201ENST00000412108 996 ntBASIC15.3■□□□□ 0.04
SHMT2P34897 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 MEIS3P1-201ENST00000495167 958 ntBASIC15.3■□□□□ 0.04
SHMT2P34897 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.3■□□□□ 0.04
SHMT2P34897 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.3■□□□□ 0.04
SHMT2P34897 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.3■□□□□ 0.04
SHMT2P34897 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHMT2P34897 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.3■□□□□ 0.04
SHMT2P34897 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 AC136621.1-201ENST00000624017 2304 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 AC006486.2-201ENST00000624246 2199 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.29■□□□□ 0.04
SHMT2P34897 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 AC138035.3-201ENST00000622706 2791 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SHMT2P34897 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 DFFBP1-201ENST00000433250 979 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.29■□□□□ 0.04
SHMT2P34897 TPRX2P-201ENST00000535362 881 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
SHMT2P34897 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 MIR4313-201ENST00000580760 101 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.29■□□□□ 0.04
SHMT2P34897 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 CICP24-201ENST00000605464 2705 ntBASIC15.29■□□□□ 0.04
SHMT2P34897 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.29■□□□□ 0.04
SHMT2P34897 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHMT2P34897 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHMT2P34897 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms