Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 E2F3P2-201ENST00000447755 1422 ntBASIC18.63■□□□□ 0.57
COL4A1P02462 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 AL133499.1-201ENST00000596207 608 ntBASIC18.63■□□□□ 0.57
COL4A1P02462 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.63■□□□□ 0.57
COL4A1P02462 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL4A1P02462 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 AP000845.1-201ENST00000581677 2131 ntBASIC18.63■□□□□ 0.57
COL4A1P02462 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.63■□□□□ 0.57
COL4A1P02462 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 AL360270.3-201ENST00000609118 1348 ntBASIC18.63■□□□□ 0.57
COL4A1P02462 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL4A1P02462 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A1P02462 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A1P02462 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC18.63■□□□□ 0.57
COL4A1P02462 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A1P02462 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A1P02462 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A1P02462 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A1P02462 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A1P02462 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.62■□□□□ 0.57
COL4A1P02462 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 NDUFAB1P1-201ENST00000404262 460 ntBASIC18.62■□□□□ 0.57
COL4A1P02462 FXNP2-201ENST00000411625 547 ntBASIC18.62■□□□□ 0.57
COL4A1P02462 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 KLF2P1-201ENST00000447438 1042 ntBASIC18.62■□□□□ 0.57
COL4A1P02462 NUP210P1-202ENST00000504322 710 ntBASIC18.62■□□□□ 0.57
COL4A1P02462 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.62■□□□□ 0.57
COL4A1P02462 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A1P02462 BNIP3P13-201ENST00000599968 566 ntBASIC18.62■□□□□ 0.57
COL4A1P02462 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 AL603764.1-201ENST00000636452 321 ntBASIC18.62■□□□□ 0.57
COL4A1P02462 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A1P02462 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A1P02462 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A1P02462 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.61■□□□□ 0.57
COL4A1P02462 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 FKBP4P6-201ENST00000457486 1332 ntBASIC18.61■□□□□ 0.57
COL4A1P02462 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A1P02462 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A1P02462 RN7SL11P-201ENST00000471305 293 ntBASIC18.61■□□□□ 0.57
COL4A1P02462 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A1P02462 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A1P02462 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL4A1P02462 AC103988.2-201ENST00000561804 725 ntBASIC18.61■□□□□ 0.57
COL4A1P02462 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A1P02462 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A1P02462 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A1P02462 AL162426.1-201ENST00000624141 743 ntBASIC18.61■□□□□ 0.57
COL4A1P02462 AC068587.8-201ENST00000641239 219 ntBASIC18.61■□□□□ 0.57
COL4A1P02462 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A1P02462 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A1P02462 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL4A1P02462 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms