Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 CTBP2P3-201ENST00000585629 1255 ntBASIC18.79■□□□□ 0.6
SALL3Q9BXA9 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 TMEM261P1-201ENST00000604899 340 ntBASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 AL158070.2-201ENST00000623713 1621 ntBASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 AC007541.1-201ENST00000570282 1469 ntBASIC18.79■□□□□ 0.6
SALL3Q9BXA9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 KRT8P22-201ENST00000562317 1415 ntBASIC18.79■□□□□ 0.6
SALL3Q9BXA9 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AC004066.1-201ENST00000502488 802 ntBASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AL359711.2-201ENST00000563105 872 ntBASIC18.78■□□□□ 0.6
SALL3Q9BXA9 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 MIR4745-201ENST00000577608 62 ntBASIC18.78■□□□□ 0.6
SALL3Q9BXA9 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.78■□□□□ 0.6
SALL3Q9BXA9 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SALL3Q9BXA9 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 AC190387.1-201ENST00000551683 408 ntBASIC18.77■□□□□ 0.6
SALL3Q9BXA9 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.77■□□□□ 0.6
SALL3Q9BXA9 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 LILRP1-201ENST00000444199 1370 ntBASIC18.77■□□□□ 0.6
SALL3Q9BXA9 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SALL3Q9BXA9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms