Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AC006001.1-201ENST00000325130 474 ntBASIC15.61■□□□□ 0.09
HMGB4Q8WW32 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AL590640.2-201ENST00000457038 527 ntBASIC15.61■□□□□ 0.09
HMGB4Q8WW32 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 ZNF767P-206ENST00000513792 565 ntBASIC15.61■□□□□ 0.09
HMGB4Q8WW32 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 BX539320.1-201ENST00000623759 877 ntBASIC15.61■□□□□ 0.09
HMGB4Q8WW32 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 AHCYP2-201ENST00000430630 1300 ntBASIC15.61■□□□□ 0.09
HMGB4Q8WW32 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HMGB4Q8WW32 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC008741.2-201ENST00000612792 3115 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 MIR1202-201ENST00000408529 83 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC006033.1-201ENST00000440505 426 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC104306.2-201ENST00000451877 341 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 MIR4313-201ENST00000580760 101 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AL022328.3-201ENST00000607943 679 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AL139099.5-201ENST00000635274 300 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 AL662844.4-201ENST00000606367 2838 ntBASIC15.6■□□□□ 0.09
HMGB4Q8WW32 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.6■□□□□ 0.09
HMGB4Q8WW32 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HMGB4Q8WW32 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms