Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.4■□□□□ 0.38
TM4SF4P48230 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
TM4SF4P48230 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TM4SF4P48230 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
TM4SF4P48230 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TM4SF4P48230 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
TM4SF4P48230 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TM4SF4P48230 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
TM4SF4P48230 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 SOD2-202ENST00000367054 815 ntTSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 IDS-203ENST00000428056 1213 ntTSL 2 BASIC17.39■□□□□ 0.37
TM4SF4P48230 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 NSD1-211ENST00000511258 809 ntTSL 3 BASIC17.39■□□□□ 0.37
TM4SF4P48230 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 C2orf69P1-201ENST00000563532 1093 ntBASIC17.39■□□□□ 0.37
TM4SF4P48230 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 AC018470.1-201ENST00000624790 3129 ntBASIC17.39■□□□□ 0.37
TM4SF4P48230 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 INE2-201ENST00000630399 1874 ntBASIC17.39■□□□□ 0.37
TM4SF4P48230 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.39■□□□□ 0.37
TM4SF4P48230 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TM4SF4P48230 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 AC009093.2-202ENST00000620513 2079 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC17.38■□□□□ 0.37
TM4SF4P48230 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC17.38■□□□□ 0.37
TM4SF4P48230 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 REEP5-205ENST00000504247 480 ntTSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.38■□□□□ 0.37
TM4SF4P48230 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 RN7SL596P-201ENST00000582123 288 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC17.38■□□□□ 0.37
TM4SF4P48230 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 RNF146-211ENST00000609447 607 ntTSL 4 BASIC17.38■□□□□ 0.37
TM4SF4P48230 MEG3_2.1-201ENST00000611456 105 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 FO393412.1-201ENST00000619841 382 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 Z98259.2-201ENST00000641583 609 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
TM4SF4P48230 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 HTR7P1-202ENST00000624664 4411 ntBASIC17.38■□□□□ 0.37
TM4SF4P48230 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TM4SF4P48230 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
TM4SF4P48230 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.37■□□□□ 0.37
TM4SF4P48230 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.37■□□□□ 0.37
TM4SF4P48230 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM4SF4P48230 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.37■□□□□ 0.37
TM4SF4P48230 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TM4SF4P48230 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TM4SF4P48230 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TM4SF4P48230 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms