Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 AL355385.1-201ENST00000606123 409 ntBASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 AP002414.2-201ENST00000591780 3365 ntBASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 AC138969.3-201ENST00000546612 1459 ntBASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 AC138932.2-201ENST00000548268 1459 ntBASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 AC126755.4-201ENST00000549796 1459 ntBASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC4Q9NTJ3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 MEIS3P1-201ENST00000495167 958 ntBASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SMC4Q9NTJ3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 AC006486.2-201ENST00000624246 2199 ntBASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 BCRP1-201ENST00000444246 691 ntBASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 GNAQP1-201ENST00000444815 1067 ntBASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 DOC2GP-202ENST00000514950 1163 ntBASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 KRT8P44-201ENST00000441609 1350 ntBASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SMC4Q9NTJ3 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMC4Q9NTJ3 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC20.02■□□□□ 0.79
SMC4Q9NTJ3 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms