Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
MMP28Q9H239 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
MMP28Q9H239 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
MMP28Q9H239 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 PI4KAP1-204ENST00000612579 1703 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC099521.3-201ENST00000624251 2938 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
MMP28Q9H239 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC073621.1-201ENST00000392730 636 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.9□□□□□ -0.18
MMP28Q9H239 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.9□□□□□ -0.18
MMP28Q9H239 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 AL049840.3-201ENST00000602669 611 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 AL356488.2-201ENST00000602755 427 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
MMP28Q9H239 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 AC005593.1-201ENST00000624894 515 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 SLC22A20-204ENST00000530038 1673 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC087386.2-201ENST00000623212 4637 ntBASIC13.9□□□□□ -0.18
MMP28Q9H239 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.9□□□□□ -0.18
MMP28Q9H239 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MMP28Q9H239 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.9□□□□□ -0.18
MMP28Q9H239 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.9□□□□□ -0.19
MMP28Q9H239 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
MMP28Q9H239 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.9□□□□□ -0.19
MMP28Q9H239 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
MMP28Q9H239 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.89□□□□□ -0.19
MMP28Q9H239 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MMP28Q9H239 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms