Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 CU634019.7-201ENST00000624153 1185 ntBASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 FP236241.2-201ENST00000624906 1185 ntBASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 INTS4P2-202ENST00000614726 2019 ntBASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
TRAIPQ9BWF2 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 KRT18P43-201ENST00000469825 1281 ntBASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 AP005482.1-201ENST00000563722 1273 ntBASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 MIR5189-201ENST00000577370 114 ntBASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 AC103702.1-201ENST00000548801 2630 ntBASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.12■□□□□ 0.33
TRAIPQ9BWF2 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 C8orf49-201ENST00000525043 1968 ntBASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 RPS2P32-201ENST00000439199 892 ntBASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AC119751.2-201ENST00000504529 210 ntBASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRAIPQ9BWF2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms