Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTCHD1Q96NR3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 COX20P2-201ENST00000452636 358 ntBASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 API5-211ENST00000534695 560 ntTSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AL662799.1-202ENST00000614205 422 ntBASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC138969.3-201ENST00000546612 1459 ntBASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC138932.2-201ENST00000548268 1459 ntBASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 AC126755.4-201ENST00000549796 1459 ntBASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.76□□□□□ -0.05
PTCHD1Q96NR3 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 CHCHD2P3-201ENST00000603038 451 ntBASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 CICP13-201ENST00000422015 2789 ntBASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTCHD1Q96NR3 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTCHD1Q96NR3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms