Protein–RNA interactions for Protein: Q8WZA2

RAPGEF4, Rap guanine nucleotide exchange factor 4, humanhuman

Predictions only

Length 1,011 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF4Q8WZA2 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.28■□□□□ 0.84
RAPGEF4Q8WZA2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.27■□□□□ 0.84
RAPGEF4Q8WZA2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
RAPGEF4Q8WZA2 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RAPGEF4Q8WZA2 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RAPGEF4Q8WZA2 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RAPGEF4Q8WZA2 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.27■□□□□ 0.83
RAPGEF4Q8WZA2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 HIST2H2BC-201ENST00000498492 580 ntBASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 COX5BP1-201ENST00000507622 393 ntBASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 ADM-202ENST00000524948 584 ntTSL 2 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AC244157.2-201ENST00000616239 1006 ntBASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAPGEF4Q8WZA2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 AC126915.1-201ENST00000522847 1038 ntBASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 NKG7-204ENST00000595217 816 ntTSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 AC084364.1-201ENST00000551967 1556 ntBASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RAPGEF4Q8WZA2 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAPGEF4Q8WZA2 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RAPGEF4Q8WZA2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
RAPGEF4Q8WZA2 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAPGEF4Q8WZA2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms