Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 AL158070.2-201ENST00000623713 1621 ntBASIC19.25■□□□□ 0.67
SYNE4Q8N205 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 AL118508.1-201ENST00000613502 2345 ntBASIC19.24■□□□□ 0.67
SYNE4Q8N205 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 AC114812.1-204ENST00000449669 728 ntBASIC19.24■□□□□ 0.67
SYNE4Q8N205 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 RPSAP36-202ENST00000494591 1261 ntBASIC19.24■□□□□ 0.67
SYNE4Q8N205 AC079328.1-201ENST00000560358 952 ntBASIC19.24■□□□□ 0.67
SYNE4Q8N205 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 AC005695.3-201ENST00000614522 232 ntBASIC19.24■□□□□ 0.67
SYNE4Q8N205 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 AC018735.1-201ENST00000437208 1502 ntBASIC19.24■□□□□ 0.67
SYNE4Q8N205 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SYNE4Q8N205 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE4Q8N205 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 HOMER2P2-201ENST00000451621 847 ntBASIC19.23■□□□□ 0.67
SYNE4Q8N205 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.23■□□□□ 0.67
SYNE4Q8N205 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.23■□□□□ 0.67
SYNE4Q8N205 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SYNE4Q8N205 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SYNE4Q8N205 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SYNE4Q8N205 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms