Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HTTP42858 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC17.1■□□□□ 0.33
HTTP42858 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HTTP42858 AC026803.1-201ENST00000569130 274 ntBASIC17.1■□□□□ 0.33
HTTP42858 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HTTP42858 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HTTP42858 TUBB8P8-201ENST00000458717 1058 ntBASIC17.09■□□□□ 0.33
HTTP42858 REEP5-205ENST00000504247 480 ntTSL 5 BASIC17.09■□□□□ 0.33
HTTP42858 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC17.09■□□□□ 0.33
HTTP42858 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC17.09■□□□□ 0.33
HTTP42858 AC103810.10-201ENST00000606504 343 ntBASIC17.09■□□□□ 0.33
HTTP42858 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC17.09■□□□□ 0.33
HTTP42858 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 RN7SL396P-201ENST00000471086 295 ntBASIC17.09■□□□□ 0.33
HTTP42858 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HTTP42858 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC17.09■□□□□ 0.33
HTTP42858 FTLP5-201ENST00000586853 534 ntBASIC17.09■□□□□ 0.33
HTTP42858 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC17.09■□□□□ 0.33
HTTP42858 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.09■□□□□ 0.33
HTTP42858 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HTTP42858 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HTTP42858 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HTTP42858 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.08■□□□□ 0.33
HTTP42858 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC17.08■□□□□ 0.33
HTTP42858 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.33
HTTP42858 AL132780.4-201ENST00000624870 1135 ntBASIC17.08■□□□□ 0.33
HTTP42858 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
HTTP42858 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HTTP42858 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HTTP42858 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HTTP42858 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.08■□□□□ 0.32
HTTP42858 AC239868.1-201ENST00000369385 493 ntBASIC17.08■□□□□ 0.32
HTTP42858 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HTTP42858 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC17.08■□□□□ 0.32
HTTP42858 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HTTP42858 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.08■□□□□ 0.32
HTTP42858 MIR4313-201ENST00000580760 101 ntBASIC17.08■□□□□ 0.32
HTTP42858 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC17.08■□□□□ 0.32
HTTP42858 LINC01165-201ENST00000445190 1623 ntBASIC17.08■□□□□ 0.32
HTTP42858 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.08■□□□□ 0.32
HTTP42858 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HTTP42858 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HTTP42858 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HTTP42858 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.08■□□□□ 0.32
HTTP42858 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC17.07■□□□□ 0.32
HTTP42858 PFN2-206ENST00000461930 606 ntTSL 4 BASIC17.07■□□□□ 0.32
HTTP42858 SHC1P1-201ENST00000425230 1745 ntBASIC17.07■□□□□ 0.32
HTTP42858 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HTTP42858 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.07■□□□□ 0.32
HTTP42858 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.07■□□□□ 0.32
HTTP42858 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC17.07■□□□□ 0.32
HTTP42858 KLF2P1-201ENST00000447438 1042 ntBASIC17.07■□□□□ 0.32
HTTP42858 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 DUX4L47-201ENST00000566374 394 ntBASIC17.07■□□□□ 0.32
HTTP42858 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.07■□□□□ 0.32
HTTP42858 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.07■□□□□ 0.32
HTTP42858 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HTTP42858 AP000356.3-201ENST00000382243 753 ntBASIC17.07■□□□□ 0.32
HTTP42858 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.07■□□□□ 0.32
HTTP42858 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.07■□□□□ 0.32
HTTP42858 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.07■□□□□ 0.32
HTTP42858 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.07■□□□□ 0.32
HTTP42858 AL136295.7-201ENST00000619226 1200 ntBASIC17.07■□□□□ 0.32
HTTP42858 FAM90A7P-201ENST00000382628 1395 ntBASIC17.07■□□□□ 0.32
HTTP42858 FAM90A23P-201ENST00000400136 1395 ntBASIC17.07■□□□□ 0.32
HTTP42858 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HTTP42858 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HTTP42858 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms