Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
SMARCA1P28370 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.81■□□□□ 0.44
SMARCA1P28370 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.81■□□□□ 0.44
SMARCA1P28370 KRT17P7-201ENST00000451704 1104 ntBASIC17.81■□□□□ 0.44
SMARCA1P28370 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.81■□□□□ 0.44
SMARCA1P28370 GIMAP3P-201ENST00000495150 836 ntBASIC17.81■□□□□ 0.44
SMARCA1P28370 MIR5189-201ENST00000577370 114 ntBASIC17.81■□□□□ 0.44
SMARCA1P28370 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 AL035252.4-201ENST00000624174 288 ntBASIC17.81■□□□□ 0.44
SMARCA1P28370 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.81■□□□□ 0.44
SMARCA1P28370 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.81■□□□□ 0.44
SMARCA1P28370 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMARCA1P28370 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 BAATP1-201ENST00000412284 1225 ntBASIC17.8■□□□□ 0.44
SMARCA1P28370 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 AC005034.1-201ENST00000426657 489 ntBASIC17.8■□□□□ 0.44
SMARCA1P28370 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.8■□□□□ 0.44
SMARCA1P28370 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
SMARCA1P28370 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SMARCA1P28370 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
SMARCA1P28370 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.8■□□□□ 0.44
SMARCA1P28370 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SMARCA1P28370 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SMARCA1P28370 MROH4P-201ENST00000431302 1578 ntBASIC17.79■□□□□ 0.44
SMARCA1P28370 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.79■□□□□ 0.44
SMARCA1P28370 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
SMARCA1P28370 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.79■□□□□ 0.44
SMARCA1P28370 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SMARCA1P28370 AC012441.1-201ENST00000446669 685 ntBASIC17.79■□□□□ 0.44
SMARCA1P28370 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.79■□□□□ 0.44
SMARCA1P28370 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.79■□□□□ 0.44
SMARCA1P28370 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
SMARCA1P28370 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.79■□□□□ 0.44
SMARCA1P28370 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 AP001582.1-201ENST00000525856 295 ntBASIC17.79■□□□□ 0.44
SMARCA1P28370 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 PTP4A1P2-201ENST00000546033 454 ntBASIC17.79■□□□□ 0.44
SMARCA1P28370 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
SMARCA1P28370 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.79■□□□□ 0.44
SMARCA1P28370 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SMARCA1P28370 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.79■□□□□ 0.44
SMARCA1P28370 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SMARCA1P28370 CROCCP1-201ENST00000426910 5675 ntBASIC17.78■□□□□ 0.44
SMARCA1P28370 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms