Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 MIR346-201ENST00000362234 95 ntBASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC243562.1-201ENST00000560672 389 ntBASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AL365209.1-201ENST00000624418 6473 ntBASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC005912.2-201ENST00000619492 2400 ntBASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 AZGP1P1-201ENST00000411909 902 ntBASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 AC136604.1-201ENST00000418535 575 ntBASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 RNA5SP416-201ENST00000516838 111 ntBASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 FAM86C2P-203ENST00000528684 1004 ntBASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 AC026979.3-201ENST00000607315 403 ntBASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM49D1C9J1S8 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.71■□□□□ 0.1
TRIM49D1C9J1S8 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 AL359258.3-201ENST00000622910 2331 ntBASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 ADH5P3-201ENST00000433842 1137 ntBASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 SPCS2P4-201ENST00000436160 681 ntBASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 RN7SL589P-201ENST00000481268 310 ntBASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.7■□□□□ 0.1
TRIM49D1C9J1S8 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms