Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 AC097359.3-201ENST00000603982 1210 ntBASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 OR2I1P-209ENST00000641730 5365 ntBASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 FOXO1B-201ENST00000504678 1527 ntBASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AC025580.3-201ENST00000617932 1424 ntBASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AL136982.4-201ENST00000437689 1740 ntBASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 UNC93B7-201ENST00000509439 705 ntBASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 AL138918.1-201ENST00000568306 659 ntBASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CCDC28BQ9BUN5 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28BQ9BUN5 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms