Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AC138932.1-201ENST00000534164 6830 ntBASIC19.28■□□□□ 0.68
SYNE4Q8N205 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE4Q8N205 AC007787.1-201ENST00000588095 1583 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 BTBD6P1-201ENST00000412176 1267 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 AC007969.1-201ENST00000433675 447 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 Z93015.1-201ENST00000451718 390 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 AL591846.1-201ENST00000451736 433 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 AL008638.5-201ENST00000623814 1298 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 AC006453.4-201ENST00000636949 1252 ntBASIC19.27■□□□□ 0.68
SYNE4Q8N205 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE4Q8N205 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE4Q8N205 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE4Q8N205 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE4Q8N205 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE4Q8N205 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE4Q8N205 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE4Q8N205 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE4Q8N205 CYP2T1P-202ENST00000641596 2535 ntBASIC19.26■□□□□ 0.67
SYNE4Q8N205 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AKR7A2P1-201ENST00000460134 915 ntBASIC19.26■□□□□ 0.67
SYNE4Q8N205 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 ACTG1P17-201ENST00000558391 1119 ntBASIC19.26■□□□□ 0.67
SYNE4Q8N205 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 AC084364.1-201ENST00000551967 1556 ntBASIC19.26■□□□□ 0.67
SYNE4Q8N205 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE4Q8N205 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE4Q8N205 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 OR6D1P-202ENST00000641007 5290 ntBASIC19.25■□□□□ 0.67
SYNE4Q8N205 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.25■□□□□ 0.67
SYNE4Q8N205 AC244452.3-201ENST00000636814 210 ntBASIC19.25■□□□□ 0.67
SYNE4Q8N205 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE4Q8N205 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms