Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AC012362.1-201ENST00000434906 739 ntBASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AC116345.2-201ENST00000512837 523 ntBASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 API5-202ENST00000420461 2009 ntTSL 2 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AC007292.2-201ENST00000593524 1812 ntBASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
VPS13DQ5THJ4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 MIR6842-201ENST00000612539 65 ntBASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 RN7SL8P-201ENST00000461771 266 ntBASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 DUX4L46-201ENST00000566845 751 ntBASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 KRT8P29-201ENST00000420409 1371 ntBASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AC004066.1-201ENST00000502488 802 ntBASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AL603764.1-201ENST00000636452 321 ntBASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
VPS13DQ5THJ4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 AC019193.1-201ENST00000506678 823 ntBASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 MIR4649-201ENST00000582839 64 ntBASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
VPS13DQ5THJ4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms