Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CR382287.1-201ENST00000623954 586 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 AC006453.4-201ENST00000636949 1252 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 AC138035.3-201ENST00000622706 2791 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 PAUPAR-201ENST00000630360 2965 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 CNN2P10-201ENST00000443067 918 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 AC026434.2-201ENST00000506094 1078 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 AL391280.1-201ENST00000506969 1062 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.3■□□□□ 0.84
COL3A1P02461 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC20.3■□□□□ 0.84
COL3A1P02461 AC073413.1-201ENST00000603927 732 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC20.3■□□□□ 0.84
COL3A1P02461 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.3■□□□□ 0.84
COL3A1P02461 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.3■□□□□ 0.84
COL3A1P02461 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL3A1P02461 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL3A1P02461 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
COL3A1P02461 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC20.29■□□□□ 0.84
COL3A1P02461 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC20.29■□□□□ 0.84
COL3A1P02461 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 AC022532.1-201ENST00000624563 1728 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC20.29■□□□□ 0.84
COL3A1P02461 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.29■□□□□ 0.84
COL3A1P02461 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 AC244107.1-201ENST00000442033 332 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC20.29■□□□□ 0.84
COL3A1P02461 FAM86HP-204ENST00000513466 959 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 AC022616.1-201ENST00000518688 554 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.29■□□□□ 0.84
COL3A1P02461 HNRNPA1P48-202ENST00000565308 961 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL3A1P02461 CLUHP2-201ENST00000426660 1303 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 AC132872.4-202ENST00000622924 2756 ntBASIC20.29■□□□□ 0.84
COL3A1P02461 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC20.29■□□□□ 0.84
COL3A1P02461 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC20.29■□□□□ 0.84
COL3A1P02461 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC20.29■□□□□ 0.84
COL3A1P02461 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COL3A1P02461 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.28■□□□□ 0.84
COL3A1P02461 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 AC245100.3-201ENST00000441281 285 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms