Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 TSPY25P-201ENST00000429463 745 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC083801.1-201ENST00000491689 358 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 AC090857.1-201ENST00000527400 390 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 ELP5-212ENST00000574255 671 ntTSL 2 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 MIR4313-201ENST00000580760 101 ntBASIC11.87□□□□□ -0.51
COL6A5A8TX70 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
COL6A5A8TX70 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.87□□□□□ -0.51
COL6A5A8TX70 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 MBLAC2-202ENST00000514906 1936 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AL583805.1-201ENST00000391389 531 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AC010900.1-201ENST00000449849 1296 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 BCL2L12P1-201ENST00000508390 733 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AC012073.1-201ENST00000606114 1108 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AC011462.4-201ENST00000616866 449 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 HYMAI-201ENST00000635591 3347 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
COL6A5A8TX70 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 VDAC1P1-201ENST00000439229 848 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 EMC4-208ENST00000559078 599 ntTSL 3 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AL450472.2-201ENST00000603663 1156 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 AP001184.1-201ENST00000637936 376 ntBASIC11.86□□□□□ -0.51
COL6A5A8TX70 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC11.86□□□□□ -0.51
COL6A5A8TX70 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 KRT8P14-201ENST00000414254 1442 ntBASIC11.85□□□□□ -0.51
COL6A5A8TX70 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AL109809.1-201ENST00000418979 1367 ntBASIC11.85□□□□□ -0.51
COL6A5A8TX70 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC11.85□□□□□ -0.51
COL6A5A8TX70 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
COL6A5A8TX70 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms