Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 MKNK2P1-201ENST00000437526 628 ntBASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AC120114.3-201ENST00000611923 658 ntBASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AC055717.3-201ENST00000622967 595 ntBASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AGAP7P-201ENST00000582299 2062 ntBASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 AGAP14-201ENST00000624701 2060 ntBASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
POLR2J3Q9H1A7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC127383.1-201ENST00000444697 1800 ntBASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 CICP23-201ENST00000605013 2741 ntBASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC079140.1-201ENST00000508039 487 ntBASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 SLC25A1P1-201ENST00000528351 927 ntBASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 KRT8P44-201ENST00000441609 1350 ntBASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
POLR2J3Q9H1A7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 YBX2P1-201ENST00000394192 760 ntBASIC14.54□□□□□ -0.08
POLR2J3Q9H1A7 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms