Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.62■□□□□ 0.25
SOX4Q06945 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.62■□□□□ 0.25
SOX4Q06945 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SOX4Q06945 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.62■□□□□ 0.25
SOX4Q06945 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 AP005482.1-201ENST00000563722 1273 ntBASIC16.62■□□□□ 0.25
SOX4Q06945 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.62■□□□□ 0.25
SOX4Q06945 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.62■□□□□ 0.25
SOX4Q06945 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.62■□□□□ 0.25
SOX4Q06945 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX4Q06945 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 TNRC18P3-201ENST00000441896 2691 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 RNU1-114P-201ENST00000365297 166 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 BNIP3P42-201ENST00000454982 569 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.61■□□□□ 0.25
SOX4Q06945 AC007551.1-201ENST00000457394 519 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX4Q06945 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.61■□□□□ 0.25
SOX4Q06945 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX4Q06945 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.61■□□□□ 0.25
SOX4Q06945 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.61■□□□□ 0.25
SOX4Q06945 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 BNIP3P29-201ENST00000598302 571 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 AC133552.6-201ENST00000613406 534 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 AC011447.5-201ENST00000616168 564 ntBASIC16.61■□□□□ 0.25
SOX4Q06945 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX4Q06945 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX4Q06945 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX4Q06945 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX4Q06945 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX4Q06945 AC090616.6-203ENST00000579186 1945 ntBASIC16.6■□□□□ 0.25
SOX4Q06945 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SOX4Q06945 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
SOX4Q06945 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SOX4Q06945 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.6■□□□□ 0.25
SOX4Q06945 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.6■□□□□ 0.25
SOX4Q06945 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SOX4Q06945 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.6■□□□□ 0.25
SOX4Q06945 KLF2P4-201ENST00000451959 1225 ntBASIC16.6■□□□□ 0.25
SOX4Q06945 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.6■□□□□ 0.25
SOX4Q06945 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.6■□□□□ 0.25
SOX4Q06945 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
SOX4Q06945 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 AP005019.2-201ENST00000615104 511 ntBASIC16.6■□□□□ 0.25
SOX4Q06945 BX539320.1-201ENST00000623759 877 ntBASIC16.6■□□□□ 0.25
SOX4Q06945 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.6■□□□□ 0.25
SOX4Q06945 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX4Q06945 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms