Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC10.96□□□□□ -0.65
PRKDCP78527 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
PRKDCP78527 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC10.96□□□□□ -0.66
PRKDCP78527 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
PRKDCP78527 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
PRKDCP78527 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC10.96□□□□□ -0.66
PRKDCP78527 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
PRKDCP78527 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
PRKDCP78527 FTH1P22-201ENST00000456305 520 ntBASIC10.96□□□□□ -0.66
PRKDCP78527 SIGLEC18P-201ENST00000602271 909 ntBASIC10.96□□□□□ -0.66
PRKDCP78527 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC10.96□□□□□ -0.66
PRKDCP78527 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
PRKDCP78527 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
PRKDCP78527 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
PRKDCP78527 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC10.96□□□□□ -0.66
PRKDCP78527 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 AMT-224ENST00000635808 1610 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 AC063952.3-201ENST00000467756 308 ntBASIC10.95□□□□□ -0.66
PRKDCP78527 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC10.95□□□□□ -0.66
PRKDCP78527 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC10.95□□□□□ -0.66
PRKDCP78527 ABHD17AP9-201ENST00000561925 548 ntBASIC10.95□□□□□ -0.66
PRKDCP78527 AL590235.1-201ENST00000564650 861 ntBASIC10.95□□□□□ -0.66
PRKDCP78527 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 MFF-204ENST00000353339 2186 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 NCR3-202ENST00000376071 541 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 STK26-204ENST00000481105 1835 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC10.95□□□□□ -0.66
PRKDCP78527 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC10.95□□□□□ -0.66
PRKDCP78527 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC10.95□□□□□ -0.66
PRKDCP78527 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC10.95□□□□□ -0.66
PRKDCP78527 GOLGA2P7-209ENST00000560408 745 ntBASIC10.95□□□□□ -0.66
PRKDCP78527 PSME2-217ENST00000615264 874 ntTSL 5 BASIC10.95□□□□□ -0.66
PRKDCP78527 PSME2-218ENST00000630027 185 ntTSL 3 BASIC10.95□□□□□ -0.66
PRKDCP78527 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 AL137077.2-201ENST00000635124 1608 ntBASIC10.95□□□□□ -0.66
PRKDCP78527 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC10.95□□□□□ -0.66
PRKDCP78527 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
PRKDCP78527 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 AL645937.2-201ENST00000396808 931 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 HNRNPA1P36-201ENST00000521313 955 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 AP002490.2-201ENST00000524791 560 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 AC110057.1-201ENST00000636031 898 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 GATB-213ENST00000515812 1893 ntTSL 5 BASIC10.94□□□□□ -0.66
PRKDCP78527 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
PRKDCP78527 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
PRKDCP78527 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC10.94□□□□□ -0.66
PRKDCP78527 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 MIR6769A-201ENST00000617340 73 ntBASIC10.94□□□□□ -0.66
PRKDCP78527 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
PRKDCP78527 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
PRKDCP78527 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
PRKDCP78527 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
PRKDCP78527 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms