Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 KRT90P-201ENST00000549264 1064 ntBASIC16.29■□□□□ 0.2
EPHB3P54753 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.29■□□□□ 0.2
EPHB3P54753 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.29■□□□□ 0.2
EPHB3P54753 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
EPHB3P54753 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 FAM86MP-201ENST00000340703 885 ntBASIC16.28■□□□□ 0.2
EPHB3P54753 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 YBX1P6-201ENST00000442962 1002 ntBASIC16.28■□□□□ 0.2
EPHB3P54753 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.28■□□□□ 0.2
EPHB3P54753 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.28■□□□□ 0.2
EPHB3P54753 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 RN7SL219P-201ENST00000582872 296 ntBASIC16.28■□□□□ 0.2
EPHB3P54753 AC025181.2-201ENST00000606994 802 ntBASIC16.28■□□□□ 0.2
EPHB3P54753 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 AC112504.1-201ENST00000623415 1841 ntBASIC16.28■□□□□ 0.2
EPHB3P54753 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.28■□□□□ 0.2
EPHB3P54753 AC068587.6-202ENST00000641839 5619 ntBASIC16.28■□□□□ 0.2
EPHB3P54753 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EPHB3P54753 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
EPHB3P54753 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.27■□□□□ 0.2
EPHB3P54753 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.27■□□□□ 0.2
EPHB3P54753 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
EPHB3P54753 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
EPHB3P54753 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
EPHB3P54753 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
EPHB3P54753 AL355994.2-201ENST00000447882 704 ntBASIC16.27■□□□□ 0.2
EPHB3P54753 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.27■□□□□ 0.2
EPHB3P54753 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.27■□□□□ 0.2
EPHB3P54753 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.27■□□□□ 0.2
EPHB3P54753 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.27■□□□□ 0.2
EPHB3P54753 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.27■□□□□ 0.2
EPHB3P54753 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.27■□□□□ 0.2
EPHB3P54753 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EPHB3P54753 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
EPHB3P54753 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
EPHB3P54753 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.27■□□□□ 0.19
EPHB3P54753 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
EPHB3P54753 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
EPHB3P54753 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.27■□□□□ 0.19
EPHB3P54753 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.27■□□□□ 0.19
EPHB3P54753 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.27■□□□□ 0.19
EPHB3P54753 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
EPHB3P54753 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
EPHB3P54753 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
EPHB3P54753 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms