Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 AC124947.2-201ENST00000547118 1133 ntBASIC15.85■□□□□ 0.13
COL6A3P12111 MIR3180-2-201ENST00000581748 88 ntBASIC15.85■□□□□ 0.13
COL6A3P12111 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A3P12111 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL6A3P12111 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 AP005264.6-204ENST00000588436 719 ntBASIC15.85■□□□□ 0.13
COL6A3P12111 AC020904.3-201ENST00000624199 442 ntBASIC15.85■□□□□ 0.13
COL6A3P12111 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
COL6A3P12111 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC15.84■□□□□ 0.13
COL6A3P12111 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC15.84■□□□□ 0.13
COL6A3P12111 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC15.84■□□□□ 0.13
COL6A3P12111 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 SIGLEC18P-201ENST00000602271 909 ntBASIC15.84■□□□□ 0.13
COL6A3P12111 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.84■□□□□ 0.13
COL6A3P12111 KRT18P9-201ENST00000604826 1300 ntBASIC15.84■□□□□ 0.13
COL6A3P12111 AC025183.3-201ENST00000623526 1482 ntBASIC15.84■□□□□ 0.13
COL6A3P12111 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
COL6A3P12111 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.84■□□□□ 0.13
COL6A3P12111 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.84■□□□□ 0.13
COL6A3P12111 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.84■□□□□ 0.13
COL6A3P12111 LINC01783-202ENST00000614408 828 ntBASIC15.84■□□□□ 0.13
COL6A3P12111 BX284668.2-205ENST00000619677 828 ntBASIC15.84■□□□□ 0.13
COL6A3P12111 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.84■□□□□ 0.13
COL6A3P12111 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A3P12111 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A3P12111 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
COL6A3P12111 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.83■□□□□ 0.13
COL6A3P12111 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.83■□□□□ 0.13
COL6A3P12111 AL512306.1-201ENST00000432698 848 ntBASIC15.83■□□□□ 0.13
COL6A3P12111 RN7SL81P-201ENST00000493781 261 ntBASIC15.83■□□□□ 0.13
COL6A3P12111 ORAOV1P1-201ENST00000503108 395 ntBASIC15.83■□□□□ 0.13
COL6A3P12111 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.83■□□□□ 0.13
COL6A3P12111 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.83■□□□□ 0.13
COL6A3P12111 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.83■□□□□ 0.13
COL6A3P12111 HLF-202ENST00000430986 1385 ntTSL 2 BASIC15.83■□□□□ 0.13
COL6A3P12111 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.83■□□□□ 0.13
COL6A3P12111 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL6A3P12111 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.83■□□□□ 0.12
COL6A3P12111 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
COL6A3P12111 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
COL6A3P12111 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC15.83■□□□□ 0.12
COL6A3P12111 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
COL6A3P12111 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A3P12111 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
COL6A3P12111 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A3P12111 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 LINC02199-201ENST00000506655 2702 ntBASIC15.82■□□□□ 0.12
COL6A3P12111 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 CLUHP2-201ENST00000426660 1303 ntBASIC15.82■□□□□ 0.12
COL6A3P12111 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL6A3P12111 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms