Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 KRT8P37-201ENST00000451609 1420 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 EEF1DP4-201ENST00000446006 880 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 AL139010.1-201ENST00000454878 894 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 AC025678.2-201ENST00000562061 970 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 AC004449.1-201ENST00000564240 433 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 AC026150.2-201ENST00000564693 1156 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 MIR6080-201ENST00000617359 66 ntBASIC12.74□□□□□ -0.37
FOXA2Q9Y261 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 KRT18P28-201ENST00000453838 1332 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 GPS2P2-201ENST00000430745 888 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 SPDYE14P-201ENST00000442619 822 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 CNN2P2-201ENST00000443536 909 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 CNN2P3-201ENST00000450201 906 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 HLA-J-203ENST00000494367 1087 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 AC018529.1-201ENST00000613063 361 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 AL136317.3-201ENST00000618497 906 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 LINC01101-201ENST00000622953 1884 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 AL136982.4-201ENST00000437689 1740 ntBASIC12.73□□□□□ -0.37
FOXA2Q9Y261 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
FOXA2Q9Y261 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms