Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 AC008677.1-201ENST00000519230 1561 ntBASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 AC139749.1-202ENST00000617529 3139 ntBASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 GRK6P1-201ENST00000400595 1711 ntBASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AL031284.1-201ENST00000419297 478 ntBASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AL009183.1-201ENST00000603760 355 ntBASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AC007064.4-201ENST00000637740 555 ntBASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 PMS2P7-201ENST00000506558 1336 ntBASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CHMP1AQ9HD42 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AC245100.5-201ENST00000452108 331 ntBASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 UNC93B6-202ENST00000528242 690 ntBASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AC109635.5-201ENST00000533593 962 ntBASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AC023141.13-201ENST00000604991 943 ntBASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AL078644.1-201ENST00000609881 752 ntBASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms