Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CHMP4AQ9BY43 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 AL596257.1-201ENST00000641463 2694 ntBASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 CICP6-201ENST00000457191 2729 ntBASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 AC084364.1-201ENST00000551967 1556 ntBASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 DKFZP434H168-201ENST00000567381 1905 ntBASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP4AQ9BY43 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 TTTY23B-201ENST00000442790 549 ntBASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AC025181.2-201ENST00000606994 802 ntBASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AL162274.1-201ENST00000617191 1098 ntBASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP4AQ9BY43 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 PTP4A1P2-201ENST00000546033 454 ntBASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP4AQ9BY43 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms