Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 YRDCP1-201ENST00000621419 643 ntBASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SMC1BQ8NDV3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 RNMTL1P1-201ENST00000454103 560 ntBASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AC138466.4-201ENST00000623965 852 ntBASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 AC074138.1-201ENST00000611182 1303 ntBASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.43■□□□□ 0.54
SMC1BQ8NDV3 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 RNU1-114P-201ENST00000365297 166 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 ISCA2P1-201ENST00000425548 448 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 HIST2H2BB-201ENST00000449108 381 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 AC100850.1-201ENST00000506768 649 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 ALG1L13P-202ENST00000519320 584 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 RBM8B-201ENST00000555532 525 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 AC134043.2-201ENST00000624206 2238 ntBASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SMC1BQ8NDV3 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 KRT8P4-201ENST00000509735 1454 ntBASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AC092068.3-201ENST00000587894 2016 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms