Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.78□□□□□ -0.36
LMO4P61968 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
LMO4P61968 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.78□□□□□ -0.36
LMO4P61968 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC12.77□□□□□ -0.36
LMO4P61968 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 AC084364.1-201ENST00000551967 1556 ntBASIC12.77□□□□□ -0.36
LMO4P61968 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.77□□□□□ -0.36
LMO4P61968 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
LMO4P61968 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.77□□□□□ -0.36
LMO4P61968 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
LMO4P61968 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 PCDHB19P-201ENST00000570871 2371 ntBASIC12.77□□□□□ -0.36
LMO4P61968 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LMO4P61968 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 RNU1-114P-201ENST00000365297 166 ntBASIC12.77□□□□□ -0.37
LMO4P61968 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 BRWD1P1-201ENST00000401091 371 ntBASIC12.77□□□□□ -0.37
LMO4P61968 ACTBP8-201ENST00000403258 1108 ntBASIC12.77□□□□□ -0.37
LMO4P61968 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 FAM197Y7-201ENST00000432892 766 ntBASIC12.77□□□□□ -0.37
LMO4P61968 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 AC078819.1-201ENST00000547454 765 ntBASIC12.77□□□□□ -0.37
LMO4P61968 AC012085.1-201ENST00000548270 765 ntBASIC12.77□□□□□ -0.37
LMO4P61968 AC023310.1-201ENST00000554836 735 ntBASIC12.77□□□□□ -0.37
LMO4P61968 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC12.77□□□□□ -0.37
LMO4P61968 DUX4L45-201ENST00000566406 1057 ntBASIC12.77□□□□□ -0.37
LMO4P61968 MIR4525-201ENST00000580000 75 ntBASIC12.77□□□□□ -0.37
LMO4P61968 RN7SL219P-201ENST00000582872 296 ntBASIC12.77□□□□□ -0.37
LMO4P61968 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 AC010328.2-201ENST00000597698 1111 ntBASIC12.77□□□□□ -0.37
LMO4P61968 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 MIR6869-201ENST00000619434 62 ntBASIC12.77□□□□□ -0.37
LMO4P61968 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
LMO4P61968 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
LMO4P61968 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LMO4P61968 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC12.77□□□□□ -0.37
LMO4P61968 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.76□□□□□ -0.37
LMO4P61968 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
LMO4P61968 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.76□□□□□ -0.37
LMO4P61968 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
LMO4P61968 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
LMO4P61968 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC12.76□□□□□ -0.37
LMO4P61968 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC12.76□□□□□ -0.37
LMO4P61968 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC12.76□□□□□ -0.37
LMO4P61968 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC12.76□□□□□ -0.37
LMO4P61968 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LMO4P61968 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.76□□□□□ -0.37
LMO4P61968 AC004066.1-201ENST00000502488 802 ntBASIC12.76□□□□□ -0.37
LMO4P61968 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.76□□□□□ -0.37
LMO4P61968 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC12.76□□□□□ -0.37
LMO4P61968 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC12.76□□□□□ -0.37
LMO4P61968 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.76□□□□□ -0.37
LMO4P61968 AC084018.2-201ENST00000613093 2607 ntBASIC12.76□□□□□ -0.37
LMO4P61968 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms