Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.16■□□□□ 0.82
COL18A1P39060 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 RN7SKP230-201ENST00000365642 335 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 Z97180.1-201ENST00000445173 988 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 AC104073.2-201ENST00000453737 312 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC20.16■□□□□ 0.82
COL18A1P39060 AL132994.2-201ENST00000603120 687 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.16■□□□□ 0.82
COL18A1P39060 AL136301.1-201ENST00000615830 422 ntBASIC20.16■□□□□ 0.82
COL18A1P39060 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL18A1P39060 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
COL18A1P39060 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL18A1P39060 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 REXO1L5P-201ENST00000622260 2098 ntBASIC20.15■□□□□ 0.82
COL18A1P39060 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 RN7SKP214-201ENST00000364208 315 ntBASIC20.15■□□□□ 0.82
COL18A1P39060 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 AL627389.1-201ENST00000413508 1182 ntBASIC20.15■□□□□ 0.82
COL18A1P39060 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
COL18A1P39060 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 SNORD3B-2-202ENST00000571722 791 ntBASIC20.15■□□□□ 0.82
COL18A1P39060 CENPX-208ENST00000584347 799 ntTSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC20.15■□□□□ 0.82
COL18A1P39060 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.15■□□□□ 0.82
COL18A1P39060 MIR7845-201ENST00000618396 99 ntBASIC20.15■□□□□ 0.82
COL18A1P39060 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL18A1P39060 TNRC18P3-201ENST00000441896 2691 ntBASIC20.15■□□□□ 0.82
COL18A1P39060 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL18A1P39060 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.14■□□□□ 0.82
COL18A1P39060 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL18A1P39060 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL18A1P39060 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL18A1P39060 FAM90A7P-201ENST00000382628 1395 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 FAM90A23P-201ENST00000400136 1395 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 AL138725.1-201ENST00000407347 1314 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 KLF2P1-201ENST00000447438 1042 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 FGFR3P1-201ENST00000449999 601 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 TUBB8P8-201ENST00000458717 1058 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 AC242376.1-201ENST00000559033 726 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC20.14■□□□□ 0.81
COL18A1P39060 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC20.14■□□□□ 0.81
COL18A1P39060 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
COL18A1P39060 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.14■□□□□ 0.81
COL18A1P39060 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.14■□□□□ 0.81
COL18A1P39060 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.14■□□□□ 0.81
COL18A1P39060 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL18A1P39060 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
COL18A1P39060 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL18A1P39060 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC20.14■□□□□ 0.81
COL18A1P39060 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC20.13■□□□□ 0.81
COL18A1P39060 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC20.13■□□□□ 0.81
COL18A1P39060 AC026434.2-201ENST00000506094 1078 ntBASIC20.13■□□□□ 0.81
COL18A1P39060 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COL18A1P39060 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.13■□□□□ 0.81
COL18A1P39060 AC244394.1-201ENST00000435000 1665 ntBASIC20.13■□□□□ 0.81
COL18A1P39060 AL157791.1-201ENST00000553667 1699 ntBASIC20.13■□□□□ 0.81
COL18A1P39060 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.13■□□□□ 0.81
COL18A1P39060 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL18A1P39060 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL18A1P39060 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC20.13■□□□□ 0.81
COL18A1P39060 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms