Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HOXC4P09017 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.19■□□□□ 0.02
HOXC4P09017 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
HOXC4P09017 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 KRT8P35-201ENST00000483942 1338 ntBASIC15.18■□□□□ 0.02
HOXC4P09017 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HOXC4P09017 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
HOXC4P09017 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HOXC4P09017 KLF2P2-201ENST00000416807 1039 ntBASIC15.18■□□□□ 0.02
HOXC4P09017 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.18■□□□□ 0.02
HOXC4P09017 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.18■□□□□ 0.02
HOXC4P09017 SAMD11P1-201ENST00000571429 661 ntBASIC15.18■□□□□ 0.02
HOXC4P09017 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.18■□□□□ 0.02
HOXC4P09017 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.18■□□□□ 0.02
HOXC4P09017 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HOXC4P09017 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.18■□□□□ 0.02
HOXC4P09017 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HOXC4P09017 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.17■□□□□ 0.02
HOXC4P09017 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 AC008894.3-201ENST00000624324 3103 ntBASIC15.17■□□□□ 0.02
HOXC4P09017 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.17■□□□□ 0.02
HOXC4P09017 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.17■□□□□ 0.02
HOXC4P09017 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
HOXC4P09017 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.17■□□□□ 0.02
HOXC4P09017 AL139094.1-201ENST00000405549 1188 ntBASIC15.17■□□□□ 0.02
HOXC4P09017 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
HOXC4P09017 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.17■□□□□ 0.02
HOXC4P09017 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.17■□□□□ 0.02
HOXC4P09017 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.17■□□□□ 0.02
HOXC4P09017 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.17■□□□□ 0.02
HOXC4P09017 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 AL603764.1-201ENST00000636452 321 ntBASIC15.17■□□□□ 0.02
HOXC4P09017 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
HOXC4P09017 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms