Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.3□□□□□ -0.12
HOXD4P09016 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HOXD4P09016 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HOXD4P09016 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
HOXD4P09016 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.3□□□□□ -0.12
HOXD4P09016 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 EEF1DP4-201ENST00000446006 880 ntBASIC14.3□□□□□ -0.12
HOXD4P09016 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 AC104596.2-201ENST00000512793 793 ntBASIC14.3□□□□□ -0.12
HOXD4P09016 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.3□□□□□ -0.12
HOXD4P09016 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
HOXD4P09016 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.3□□□□□ -0.12
HOXD4P09016 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXD4P09016 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HOXD4P09016 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HOXD4P09016 AC023908.3-201ENST00000564211 3047 ntBASIC14.3□□□□□ -0.12
HOXD4P09016 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXD4P09016 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HOXD4P09016 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXD4P09016 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
HOXD4P09016 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD4P09016 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD4P09016 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.29□□□□□ -0.12
HOXD4P09016 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD4P09016 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXD4P09016 RARRES2P5-201ENST00000564013 466 ntBASIC14.29□□□□□ -0.12
HOXD4P09016 AC106886.1-201ENST00000568660 600 ntBASIC14.29□□□□□ -0.12
HOXD4P09016 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXD4P09016 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD4P09016 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD4P09016 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.29□□□□□ -0.12
HOXD4P09016 CHCHD2P3-201ENST00000603038 451 ntBASIC14.29□□□□□ -0.12
HOXD4P09016 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 Z97205.2-201ENST00000564697 1639 ntBASIC14.29□□□□□ -0.12
HOXD4P09016 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 AL136982.4-201ENST00000437689 1740 ntBASIC14.29□□□□□ -0.12
HOXD4P09016 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXD4P09016 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD4P09016 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD4P09016 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.28□□□□□ -0.12
HOXD4P09016 HIST3H2BA-201ENST00000436555 524 ntBASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms