Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.47■□□□□ 0.07
VPS4BO75351 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS4BO75351 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.47■□□□□ 0.07
VPS4BO75351 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS4BO75351 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS4BO75351 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
VPS4BO75351 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.47■□□□□ 0.07
VPS4BO75351 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.46■□□□□ 0.07
VPS4BO75351 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 SPDYE7P-202ENST00000420373 878 ntBASIC15.46■□□□□ 0.07
VPS4BO75351 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS4BO75351 IGHV3-62-201ENST00000520057 340 ntBASIC15.46■□□□□ 0.07
VPS4BO75351 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS4BO75351 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.46■□□□□ 0.07
VPS4BO75351 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.46■□□□□ 0.07
VPS4BO75351 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS4BO75351 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS4BO75351 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS4BO75351 FO538757.1-201ENST00000623083 1397 ntBASIC15.46■□□□□ 0.07
VPS4BO75351 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS4BO75351 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VPS4BO75351 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.46■□□□□ 0.06
VPS4BO75351 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
VPS4BO75351 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VPS4BO75351 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.46■□□□□ 0.06
VPS4BO75351 AC112693.3-201ENST00000624819 1983 ntBASIC15.45■□□□□ 0.06
VPS4BO75351 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS4BO75351 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.45■□□□□ 0.06
VPS4BO75351 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
VPS4BO75351 AL691432.1-201ENST00000596308 1422 ntBASIC15.45■□□□□ 0.06
VPS4BO75351 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
VPS4BO75351 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
VPS4BO75351 AC092127.1-201ENST00000567093 3455 ntBASIC15.45■□□□□ 0.06
VPS4BO75351 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VPS4BO75351 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms