Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX2O14529 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC26.19■■□□□ 1.78
CUX2O14529 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC26.19■■□□□ 1.78
CUX2O14529 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 LINC00634-202ENST00000505157 222 ntBASIC26.18■■□□□ 1.78
CUX2O14529 AP003398.1-201ENST00000531124 318 ntBASIC26.18■■□□□ 1.78
CUX2O14529 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC26.18■■□□□ 1.78
CUX2O14529 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
CUX2O14529 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC26.18■■□□□ 1.78
CUX2O14529 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC26.18■■□□□ 1.78
CUX2O14529 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC26.18■■□□□ 1.78
CUX2O14529 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC26.18■■□□□ 1.78
CUX2O14529 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX2O14529 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
CUX2O14529 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC26.17■■□□□ 1.78
CUX2O14529 NUDT4P2-201ENST00000578341 546 ntBASIC26.17■■□□□ 1.78
CUX2O14529 AC107464.3-201ENST00000609172 737 ntBASIC26.17■■□□□ 1.78
CUX2O14529 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC26.17■■□□□ 1.78
CUX2O14529 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
CUX2O14529 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC26.17■■□□□ 1.78
CUX2O14529 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CUX2O14529 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC26.17■■□□□ 1.78
CUX2O14529 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC26.17■■□□□ 1.78
CUX2O14529 HLA-J-204ENST00000495278 958 ntBASIC26.17■■□□□ 1.78
CUX2O14529 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC26.17■■□□□ 1.78
CUX2O14529 AC087392.5-201ENST00000612517 489 ntBASIC26.17■■□□□ 1.78
CUX2O14529 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
CUX2O14529 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC26.16■■□□□ 1.78
CUX2O14529 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC26.16■■□□□ 1.78
CUX2O14529 AC005052.1-201ENST00000625181 2492 ntBASIC26.16■■□□□ 1.78
CUX2O14529 POLL-217ENST00000628479 1953 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX2O14529 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX2O14529 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX2O14529 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX2O14529 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX2O14529 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC26.16■■□□□ 1.78
CUX2O14529 HNRNPA1P36-201ENST00000521313 955 ntBASIC26.16■■□□□ 1.78
CUX2O14529 FAM86B3P-203ENST00000523992 854 ntBASIC26.16■■□□□ 1.78
CUX2O14529 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC26.16■■□□□ 1.78
CUX2O14529 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
CUX2O14529 LRRC59-203ENST00000576448 1531 ntBASIC26.15■■□□□ 1.78
CUX2O14529 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC26.15■■□□□ 1.78
CUX2O14529 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
CUX2O14529 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
CUX2O14529 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC26.15■■□□□ 1.78
CUX2O14529 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC26.15■■□□□ 1.78
CUX2O14529 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC26.15■■□□□ 1.78
CUX2O14529 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC26.15■■□□□ 1.78
CUX2O14529 POLD4-208ENST00000532830 904 ntTSL 3 BASIC26.15■■□□□ 1.78
CUX2O14529 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC26.15■■□□□ 1.78
CUX2O14529 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
CUX2O14529 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX2O14529 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CUX2O14529 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CUX2O14529 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CUX2O14529 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CUX2O14529 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
CUX2O14529 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC26.14■■□□□ 1.78
CUX2O14529 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC26.14■■□□□ 1.78
CUX2O14529 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC26.14■■□□□ 1.78
CUX2O14529 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
CUX2O14529 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CUX2O14529 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC26.14■■□□□ 1.77
CUX2O14529 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
CUX2O14529 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
CUX2O14529 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.77
CUX2O14529 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC26.13■■□□□ 1.77
CUX2O14529 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
CUX2O14529 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CUX2O14529 AMT-233ENST00000636522 1620 ntTSL 2 BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms