Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AF228730.6-201ENST00000641497 218 ntBASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AC084121.3-201ENST00000641716 218 ntBASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AC063926.3-201ENST00000624734 5658 ntBASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 NORAD-201ENST00000565493 5339 ntBASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 AC007541.1-201ENST00000570282 1469 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 PIN1P1-201ENST00000412108 996 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 AC074338.1-201ENST00000416825 156 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 AL589987.1-201ENST00000453380 819 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 TPRX2P-201ENST00000535362 881 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 LINC02084-201ENST00000606069 1096 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 TSPY26P-202ENST00000565928 3884 ntBASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PTCHD1Q96NR3 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTCHD1Q96NR3 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
PTCHD1Q96NR3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTCHD1Q96NR3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
PTCHD1Q96NR3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 MEIS3P1-201ENST00000495167 958 ntBASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 AC092337.1-201ENST00000568699 1129 ntBASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 MIR4313-201ENST00000580760 101 ntBASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
PTCHD1Q96NR3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms