Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 AC023310.3-201ENST00000557027 670 ntBASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 AC100756.1-201ENST00000562736 682 ntBASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 AC138749.3-201ENST00000567691 622 ntBASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 AC116165.1-201ENST00000611806 668 ntBASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 ARSEP1-201ENST00000420443 635 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 KRT17P7-201ENST00000451704 1104 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 LINC00528-201ENST00000600723 2160 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 SPDYE19P-201ENST00000338590 713 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AC009407.1-201ENST00000568958 598 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AC132938.2-201ENST00000579188 680 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AL591163.1-201ENST00000641757 987 ntBASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
SHROOM3Q8TF72 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.96■□□□□ 0.14
SHROOM3Q8TF72 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.96■□□□□ 0.14
SHROOM3Q8TF72 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.96■□□□□ 0.14
SHROOM3Q8TF72 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.96■□□□□ 0.14
SHROOM3Q8TF72 AC006486.2-201ENST00000624246 2199 ntBASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.95■□□□□ 0.14
SHROOM3Q8TF72 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms