Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.15□□□□□ -0.14
CCDC58Q4VC31 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 RPS2P28-201ENST00000314255 741 ntBASIC14.15□□□□□ -0.14
CCDC58Q4VC31 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 AL078644.1-201ENST00000609881 752 ntBASIC14.15□□□□□ -0.14
CCDC58Q4VC31 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 AC027612.1-201ENST00000445234 2395 ntBASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC58Q4VC31 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.15□□□□□ -0.15
CCDC58Q4VC31 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.15□□□□□ -0.15
CCDC58Q4VC31 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AC134407.2-201ENST00000625089 1978 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 CICP23-201ENST00000605013 2741 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AC092127.1-201ENST00000567093 3455 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 GPX1P2-201ENST00000429271 606 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 RNPS1P1-201ENST00000507437 918 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 CLEC4GP1-201ENST00000596555 870 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AL009183.1-201ENST00000603760 355 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AC126365.1-201ENST00000578585 1514 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 249.4 ms