Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
ABCA4P78363 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.51□□□□□ -0.25
ABCA4P78363 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.51□□□□□ -0.25
ABCA4P78363 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.51□□□□□ -0.25
ABCA4P78363 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.51□□□□□ -0.25
ABCA4P78363 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.51□□□□□ -0.25
ABCA4P78363 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
ABCA4P78363 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC13.51□□□□□ -0.25
ABCA4P78363 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 AC026954.1-201ENST00000429771 1293 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.51□□□□□ -0.25
ABCA4P78363 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.51□□□□□ -0.25
ABCA4P78363 HNRNPUP1-201ENST00000554987 333 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 CLUHP6-201ENST00000580789 941 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 AL049840.4-201ENST00000602422 811 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 AL021578.1-201ENST00000613646 709 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.51□□□□□ -0.25
ABCA4P78363 AL008638.5-201ENST00000623814 1298 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.5□□□□□ -0.25
ABCA4P78363 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.5□□□□□ -0.25
ABCA4P78363 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
ABCA4P78363 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
ABCA4P78363 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 MIR663B-201ENST00000408361 115 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.5□□□□□ -0.25
ABCA4P78363 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.5□□□□□ -0.25
ABCA4P78363 AC079328.1-201ENST00000560358 952 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
ABCA4P78363 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.5□□□□□ -0.25
ABCA4P78363 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 CROCCP1-201ENST00000426910 5675 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
ABCA4P78363 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.5□□□□□ -0.25
ABCA4P78363 AC007969.1-201ENST00000433675 447 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 FAM86HP-204ENST00000513466 959 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.5□□□□□ -0.25
ABCA4P78363 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.5□□□□□ -0.25
ABCA4P78363 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.5□□□□□ -0.25
ABCA4P78363 AC093813.1-201ENST00000605066 256 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 AL118558.3-201ENST00000607414 1079 ntBASIC13.5□□□□□ -0.25
ABCA4P78363 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.5□□□□□ -0.25
ABCA4P78363 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
ABCA4P78363 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
ABCA4P78363 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
ABCA4P78363 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms