Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
RNF4P78317 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
RNF4P78317 AC068587.6-202ENST00000641839 5619 ntBASIC14.56□□□□□ -0.08
RNF4P78317 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.56□□□□□ -0.08
RNF4P78317 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.56□□□□□ -0.08
RNF4P78317 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
RNF4P78317 TP53TG3HP-202ENST00000569755 579 ntBASIC14.56□□□□□ -0.08
RNF4P78317 CHCHD2P3-201ENST00000603038 451 ntBASIC14.56□□□□□ -0.08
RNF4P78317 AL391069.4-201ENST00000609583 481 ntBASIC14.56□□□□□ -0.08
RNF4P78317 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
RNF4P78317 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
RNF4P78317 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.56□□□□□ -0.08
RNF4P78317 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RNF4P78317 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.55□□□□□ -0.08
RNF4P78317 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.55□□□□□ -0.08
RNF4P78317 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.55□□□□□ -0.08
RNF4P78317 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
RNF4P78317 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.55□□□□□ -0.08
RNF4P78317 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.55□□□□□ -0.08
RNF4P78317 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.55□□□□□ -0.08
RNF4P78317 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.55□□□□□ -0.08
RNF4P78317 AC036164.1-201ENST00000570544 333 ntBASIC14.55□□□□□ -0.08
RNF4P78317 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
RNF4P78317 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
RNF4P78317 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RNF4P78317 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
RNF4P78317 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
RNF4P78317 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.54□□□□□ -0.08
RNF4P78317 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 RN7SL399P-201ENST00000471648 279 ntBASIC14.54□□□□□ -0.08
RNF4P78317 AC123567.1-201ENST00000548294 1261 ntBASIC14.54□□□□□ -0.08
RNF4P78317 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.54□□□□□ -0.08
RNF4P78317 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.54□□□□□ -0.08
RNF4P78317 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.54□□□□□ -0.08
RNF4P78317 AC093726.1-201ENST00000608064 963 ntBASIC14.54□□□□□ -0.08
RNF4P78317 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.54□□□□□ -0.08
RNF4P78317 AC007431.3-201ENST00000623221 587 ntBASIC14.54□□□□□ -0.08
RNF4P78317 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.54□□□□□ -0.08
RNF4P78317 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
RNF4P78317 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.54□□□□□ -0.08
RNF4P78317 CLK3P2-201ENST00000427566 1453 ntBASIC14.54□□□□□ -0.08
RNF4P78317 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms