Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC12.79□□□□□ -0.36
LMO4P61968 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 GUK1-206ENST00000366723 845 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 APOC3-202ENST00000375345 604 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 NUS1P3-201ENST00000423502 862 ntBASIC12.79□□□□□ -0.36
LMO4P61968 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 YBX1P6-201ENST00000442962 1002 ntBASIC12.79□□□□□ -0.36
LMO4P61968 AC114812.1-204ENST00000449669 728 ntBASIC12.79□□□□□ -0.36
LMO4P61968 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC12.79□□□□□ -0.36
LMO4P61968 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.79□□□□□ -0.36
LMO4P61968 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC12.79□□□□□ -0.36
LMO4P61968 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 AC008687.7-202ENST00000637404 953 ntBASIC12.79□□□□□ -0.36
LMO4P61968 PRSS30P-206ENST00000641773 873 ntBASIC12.79□□□□□ -0.36
LMO4P61968 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 AC022188.1-201ENST00000620960 1664 ntBASIC12.79□□□□□ -0.36
LMO4P61968 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.79□□□□□ -0.36
LMO4P61968 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LMO4P61968 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.79□□□□□ -0.36
LMO4P61968 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC12.79□□□□□ -0.36
LMO4P61968 AC127383.1-201ENST00000444697 1800 ntBASIC12.78□□□□□ -0.36
LMO4P61968 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 AC006001.1-201ENST00000325130 474 ntBASIC12.78□□□□□ -0.36
LMO4P61968 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 KLF2P2-201ENST00000416807 1039 ntBASIC12.78□□□□□ -0.36
LMO4P61968 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 AHRR-211ENST00000515206 462 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.78□□□□□ -0.36
LMO4P61968 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC12.78□□□□□ -0.36
LMO4P61968 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC12.78□□□□□ -0.36
LMO4P61968 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
LMO4P61968 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.78□□□□□ -0.36
LMO4P61968 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
LMO4P61968 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LMO4P61968 AL118508.1-201ENST00000613502 2345 ntBASIC12.78□□□□□ -0.36
LMO4P61968 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms