Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MSH3P20585 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.69■□□□□ 0.1
MSH3P20585 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
MSH3P20585 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
MSH3P20585 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.68■□□□□ 0.1
MSH3P20585 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 AC136604.1-201ENST00000418535 575 ntBASIC15.68■□□□□ 0.1
MSH3P20585 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.68■□□□□ 0.1
MSH3P20585 AC009477.1-201ENST00000452936 217 ntBASIC15.68■□□□□ 0.1
MSH3P20585 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 ZNF890P-202ENST00000530367 1156 ntBASIC15.68■□□□□ 0.1
MSH3P20585 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.68■□□□□ 0.1
MSH3P20585 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
MSH3P20585 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.68■□□□□ 0.1
MSH3P20585 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
MSH3P20585 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.68■□□□□ 0.1
MSH3P20585 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
MSH3P20585 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MSH3P20585 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MSH3P20585 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
MSH3P20585 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSH3P20585 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
MSH3P20585 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.67■□□□□ 0.1
MSH3P20585 TARDBPP1-201ENST00000442013 1203 ntBASIC15.67■□□□□ 0.1
MSH3P20585 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.67■□□□□ 0.1
MSH3P20585 MIR4313-201ENST00000580760 101 ntBASIC15.67■□□□□ 0.1
MSH3P20585 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.67■□□□□ 0.1
MSH3P20585 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.67■□□□□ 0.1
MSH3P20585 AC097359.3-201ENST00000603982 1210 ntBASIC15.67■□□□□ 0.1
MSH3P20585 AC074044.1-201ENST00000609673 707 ntBASIC15.67■□□□□ 0.1
MSH3P20585 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.67■□□□□ 0.1
MSH3P20585 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MSH3P20585 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSH3P20585 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 AL607033.1-201ENST00000623900 1599 ntBASIC15.66■□□□□ 0.1
MSH3P20585 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms