Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 AL138709.1-201ENST00000614840 1693 ntBASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
SHROOM4Q9ULL8 AP003680.1-201ENST00000598970 3660 ntBASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 KRTAP19-9P-201ENST00000421795 191 ntBASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 CYGB-203ENST00000589145 788 ntTSL 3 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SHROOM4Q9ULL8 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 AC091046.1-201ENST00000331871 207 ntBASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 MIR4741-201ENST00000579822 90 ntBASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 RN7SL720P-201ENST00000488178 304 ntBASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 AC015910.1-201ENST00000579400 975 ntBASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC29.55■■■□□ 2.32
SHROOM4Q9ULL8 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 AC084018.2-201ENST00000613093 2607 ntBASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 MTHFR-217ENST00000641820 1569 ntBASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 KRT18P43-201ENST00000469825 1281 ntBASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 AC124067.4-201ENST00000519691 2379 ntBASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 CMC2-214ENST00000565925 640 ntTSL 5 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 AC069224.1-201ENST00000566372 1715 ntBASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
SHROOM4Q9ULL8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 PGGT1BP2-201ENST00000398621 1028 ntBASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 FTLP1-201ENST00000449155 526 ntBASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 IFT20-206ENST00000578122 834 ntTSL 2 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 IFT20-208ENST00000578985 831 ntTSL 3 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 FLII-221ENST00000578558 2377 ntTSL 5 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC29.53■■■□□ 2.32
SHROOM4Q9ULL8 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC29.52■■■□□ 2.32
SHROOM4Q9ULL8 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC29.52■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms