Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AC009779.1-201ENST00000551138 283 ntBASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AL161670.2-201ENST00000557650 1227 ntBASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 RN7SL555P-201ENST00000584742 339 ntBASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK3Q9BYB0 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 NPPA-201ENST00000376476 728 ntTSL 3 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 AL157414.3-201ENST00000624276 1954 ntBASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK3Q9BYB0 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.83■□□□□ 0.76
SHANK3Q9BYB0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 HLA-J-204ENST00000495278 958 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC005740.2-201ENST00000511085 419 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC022616.1-201ENST00000518688 554 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 Z98259.2-201ENST00000641583 609 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AL603832.2-201ENST00000566195 2125 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC011840.2-201ENST00000563063 1520 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 INE2-201ENST00000630399 1874 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 EID1-202ENST00000560490 584 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AL162426.1-201ENST00000624141 743 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 AC100757.4-201ENST00000626934 759 ntBASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK3Q9BYB0 KRT8P29-201ENST00000420409 1371 ntBASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms