Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 AP003171.2-201ENST00000528208 925 ntBASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 MIR4321-201ENST00000592276 80 ntBASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 AC025271.4-201ENST00000621477 1726 ntBASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 PRAL-201ENST00000624952 3286 ntBASIC13.16□□□□□ -0.3
CSMD1Q96PZ7 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 ALG1L13P-202ENST00000519320 584 ntBASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 BRI3P1-201ENST00000440440 378 ntBASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 NOC2LP1-201ENST00000450578 752 ntBASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 AC013355.1-201ENST00000562625 723 ntBASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 AC004923.1-202ENST00000642106 209 ntBASIC13.15□□□□□ -0.3
CSMD1Q96PZ7 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CSMD1Q96PZ7 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC13.15□□□□□ -0.31
CSMD1Q96PZ7 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CSMD1Q96PZ7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 AC007718.1-201ENST00000621078 280 ntBASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 AC079112.1-201ENST00000454972 939 ntBASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD1Q96PZ7 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms