Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC112693.3-201ENST00000624819 1983 ntBASIC11.85□□□□□ -0.51
LINC00477Q96M19 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 INO80E-210ENST00000567705 880 ntTSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 IGHV3OR16-6-201ENST00000568775 360 ntBASIC11.85□□□□□ -0.51
LINC00477Q96M19 COX5A-206ENST00000568783 571 ntTSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC026120.1-201ENST00000611536 926 ntBASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC091812.2-201ENST00000619081 385 ntBASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC092865.6-201ENST00000642101 219 ntBASIC11.85□□□□□ -0.51
LINC00477Q96M19 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 BID-213ENST00000615414 2236 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 AC018892.3-201ENST00000623986 2499 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TNRC18P2-201ENST00000417666 2714 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 C18orf15-201ENST00000623680 2534 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 ACTG1P14-201ENST00000446382 1122 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 ELP6-209ENST00000446787 894 ntTSL 3 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 GATB-205ENST00000508611 605 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 MAX-210ENST00000555419 765 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 AC106730.1-201ENST00000566722 1090 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 AP000842.3-202ENST00000569238 1080 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 PIN1-206ENST00000587625 878 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 BX640515.1-201ENST00000617215 977 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms