Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 TERF1P3-201ENST00000505638 1227 ntBASIC14.18□□□□□ -0.14
CPNE4Q96A23 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 AC008761.3-201ENST00000624803 892 ntBASIC14.18□□□□□ -0.14
CPNE4Q96A23 AC004461.2-201ENST00000629517 803 ntBASIC14.18□□□□□ -0.14
CPNE4Q96A23 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CPNE4Q96A23 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
CPNE4Q96A23 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AC104794.3-201ENST00000566840 1248 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 AC092337.1-201ENST00000568699 1129 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 LINC02560-201ENST00000596379 459 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AC018892.3-201ENST00000623986 2499 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CPNE4Q96A23 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.17□□□□□ -0.14
CPNE4Q96A23 AC010491.1-201ENST00000563101 2797 ntBASIC14.17□□□□□ -0.14
CPNE4Q96A23 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 AC236430.1-201ENST00000402231 743 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms