Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 ADAM3B-201ENST00000569937 840 ntBASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 AC004877.2-201ENST00000623941 599 ntBASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 AC067750.1-201ENST00000608826 6545 ntBASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 AC105250.1-201ENST00000509378 2057 ntBASIC14.77□□□□□ -0.05
DEPDC4Q8N2C3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AC090616.6-203ENST00000579186 1945 ntBASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AL513480.1-201ENST00000451731 511 ntBASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AC245100.5-201ENST00000452108 331 ntBASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
DEPDC4Q8N2C3 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AC211486.1-202ENST00000416371 468 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AC074386.1-202ENST00000463561 864 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AC211476.1-201ENST00000503899 468 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AC010326.4-201ENST00000604665 891 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 C20orf181-201ENST00000623918 480 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AC010507.1-201ENST00000633895 436 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms